Adding Annotation and Style (2024)

Adding Annotation and Style (1)

Source: vignettes/guides/annotation.Rmd

annotation.Rmd

library(patchwork)

Sometimes you simply want to put multiple plots side by side and callit a day, but often you want the end result to stand forth like acollective thing. To achieve that you would often add a title and othertextual cues. This guide will teach you how to do that.

As always, we start with some plots.

library(ggplot2)p1 <- ggplot(mtcars) +  geom_point(aes(mpg, disp)) +  ggtitle('Plot 1')p2 <- ggplot(mtcars) +  geom_boxplot(aes(gear, disp, group = gear)) +  ggtitle('Plot 2')p3 <- ggplot(mtcars) +  geom_point(aes(hp, wt, colour = mpg)) +  ggtitle('Plot 3')p4 <- ggplot(mtcars) +  geom_bar(aes(gear)) +  facet_wrap(~cyl) +  ggtitle('Plot 4')

Titles, subtitles and captions

One of the most needed things is to add descriptive text to your plotensemble. To achieve this, you simply add it to your patchwork usingplot_annotation()

patchwork <- (p1 + p2) / p3patchwork + plot_annotation( title = 'The surprising truth about mtcars', subtitle = 'These 3 plots will reveal yet-untold secrets about our beloved data-set', caption = 'Disclaimer: None of these plots are insightful')

Adding Annotation and Style (2)

It is important to note that plot annotations only have an effect onthe top-level patchwork. Any annotation added to nested patchworks are(currently) lost. If you need to have annotations for a nested patchworkyou’ll need to wrap it in wrap_elements() with theside-effect that alignment no longer works.

Tagging

Often, especially in scientific literature, multiple plots arecollected in a single figure and referred to by a tag. While such tagscould be added manually, it is much simpler to let patchwork handle itfor you, using the auto-tagging functionality. This is turned on bysetting tag_level in plot_annotation() to avalue indicating the family of symbols to use for tagging:'1' for Arabic numerals, 'A' for uppercaseLatin letters, 'a' for lowercase Latin letters,'I' for uppercase Roman numerals, and 'i' forlowercase Roman numerals.

patchwork + plot_annotation(tag_levels = 'A')

Adding Annotation and Style (3)

Tags uses the theming of the plot they are applied to, so make surethey match up, or modify the theming of all plots using& (see the Plot Assemblyguide).

patchwork +  plot_annotation(tag_levels = 'A') &  theme(plot.tag = element_text(size = 8))

Adding Annotation and Style (4)

When the patchwork contains nested layouts the tagging will recurseinto them by default, but you can tell it to define a new tagging levelwith the tag_level argument in plot_layout().You can then provide multiple tag-types to tag_levels todefine how subtagging should be enumerated.

patchwork[[1]] <- patchwork[[1]] + plot_layout(tag_level = 'new')patchwork + plot_annotation(tag_levels = c('A', '1'))

Adding Annotation and Style (5)

With plot_annotation()it is also possible to defineseparator, prefix, and suffix for the tag, but don’t go overboard withit:

patchwork + plot_annotation(tag_levels = c('A', '1'), tag_prefix = 'Fig. ', tag_sep = '.', tag_suffix = ':')

Adding Annotation and Style (6)

The default ggplot2 theme puts the tag in its own row and column thatwill expand to fit. For longer tag text this will look weird, so it isbetter to place it on top of the plot region:

patchwork +  plot_annotation(tag_levels = c('A', '1'), tag_prefix = 'Fig. ', tag_sep = '.',  tag_suffix = ':') &  theme(plot.tag.position = c(0, 1), plot.tag = element_text(size = 8, hjust = 0, vjust = 0))

Adding Annotation and Style (7)

Lastly it is also possible to provide you own tag sequence instead ofrelying on the build in ones. Passing a list of character vectors willdo just that (note that this can be mixed with the standardsequences):

patchwork +  plot_annotation(tag_levels = list(c('#', '&'), '1'))

Adding Annotation and Style (8)

If you provide more plots than your custom sequence support theexcess plots will get empty tags so make sure that there’s enough.

Styling the patchwork

Most of the style of the patchwork is made up by the themes of theindividual patches. For a coherent look, don’t mix widely differentlooks. Setting the background colour of a single plot to a differentshade is an effective way to highlight it, but e.g.different fonts orline widths will just look like a mess. The patchwork itself has a fewelements itself that is susceptible to theming: A background, a margin,and title, subtitle & caption. The theme of the patchwork is bydefault the default ggplot2 theme. It can be changed though, in twodifferent ways. The easiest is to simply use & with atheme element. This operator will add to the theme of all subplots aswell as to the theme of the patchwork itself:

patchwork +  plot_annotation(title = 'The surprising truth about mtcars') &  theme(text = element_text('mono'))

Adding Annotation and Style (9)

If you need to address only the theme of the patchwork itself(e.g.for making the patchwork title larger than the plot titles), itcan be done with the theme argument inplot_annotation() (note that the use of one does notexclude the other):

patchwork +  plot_annotation(title = 'The surprising truth about mtcars', theme = theme(plot.title = element_text(size = 18))) &  theme(text = element_text('mono'))

Adding Annotation and Style (10)

Want more?

Now you know how to annotate and style your patchwork. Read the otherguides about assembling and laying out patchwork to master all ofpatchwork.

Adding Annotation and Style (2024)

FAQs

How to write an annotation answer? ›

Annotating
  1. Summarize important ideas in your own words.
  2. Add examples from real life, other books, TV, movies, and so forth.
  3. Define words that are new to you.
  4. Mark passages that you find confusing with question marks.
  5. Write questions that you might have for later discussion in class.

What does annotate answers mean? ›

It means to add notes (an-NOTE-tate) to text that you are reading, to offer explanation, comments or opinions to the author's words. Annotation takes practice, and the better you are at it, the better you will be at reading complicated articles.

How to write an annotation in an exam? ›

An annotation might look like highlighting information information or vocabulary in a text, marking a text with symbols to represent different ideas, creating notes in the margins of a text to keep track of thoughts and questions, or writing summaries at the end of a chapter or section for easy review.

What are annotation 3 examples? ›

A reader might annotate a book, paper, pamphlet. or other texts for the following reasons: a student noting important ideas from the content by highlighting or underlining passages in their textbook. a student noting examples or quotes in the margins of a textbook. a reader noting content to be revisited at a later ...

What is a good example of annotations? ›

Highlighting or underlining key words and phrases or major ideas is the most common form of annotating texts. Many people use this method to make it easier to review material, especially for exams.

How do you annotate for beginners? ›

How do you annotate?
  1. Summarize key points in your own words.
  2. Circle key concepts and phrases.
  3. Write brief comments and questions in the margins.
  4. Use abbreviations and symbols.
  5. Highlight/underline.
  6. Use comment and highlight features built into pdfs, online/digital textbooks, or other apps and browser add-ons.

How do you annotate a response? ›

Annotating texts
  1. circling or underlining words or phrases that are interesting or important and writing notes in the margin.
  2. using different coloured highlighters to pick out different ideas, techniques or details.
  3. using one margin to make a note of literary devices. and the other margin to add your own responses.

What does it mean to annotate example? ›

to add a short explanation or opinion to a text or image: Annotated editions of Shakespeare's plays help readers to understand old words. an annotated bibliography/manuscript/edition. His great-granddaughter has painstakingly transcribed and annotated his wartime diaries.

How to properly write an annotation? ›

Each annotation should be concise. Do not write too much—annotations should not extend beyond one paragraph (unless assignment guidelines say otherwise). The summary should be a brief outline of argument(s) and main ideas. Only mention details that are significant or relevant, and only when necessary.

What is a sample annotation? ›

SAMPLE. ANNOTATION. The purpose of the annotation is to provide the read- er with a summary of one objective that highlights the learning experience. It is essential to clearly explain the reason the goal was important for you to accomplish AND the reason your evidence is applicable to showcasing your achievements.

How do you format annotations? ›

Basic Writing & Format Tips

Each annotation should be one paragraph, between three to six sentences long (about 150-200 words). All lines should be double-spaced. Do not add an extra line between the citations. If your list of citations is especially long, you can organize it by topic.

What words should you use in annotations? ›

Remember: If you are working in a group, your annotations should use words like “we” and “our.” If you are working alone, your annotations should use words like “I” and “my.” This ​book​ helped me / us to understand… This ​document​ was important to my/our topic because… After reading this ​newspaper article​ I / we ….

How to summarize an annotation? ›

Writing a summary. The first part of an annotation is usually a summary or description of the text. This involves briefly outlining the author's main points, as well as providing an overview of the approach or methodology they have used. As you read each source, focus on understanding the main ideas.

What is basic annotation? ›

The simplest type of mapping to a database column. The Basic annotation can be applied to a persistent property or instance variable of any of the following types: Java primitive types, wrappers of the primitive types, String , java.

How do you write an annotation step by step? ›

How do you annotate?
  1. Summarize key points in your own words.
  2. Circle key concepts and phrases.
  3. Write brief comments and questions in the margins.
  4. Use abbreviations and symbols.
  5. Highlight/underline.
  6. Use comment and highlight features built into pdfs, online/digital textbooks, or other apps and browser add-ons.

What is the format of annotation? ›

Annotations can be saved in a variety of formats – Pascal VOC XMLs, COCO JSONs,, YOLO, text files, and picture masks.

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